Molecular Modeling And Simulation

Author: Tamar Schlick
Publisher: Springer Science & Business Media
ISBN: 9780387224640
Size: 19.17 MB
Format: PDF
View: 98

Very broad overview of the field intended for an interdisciplinary audience; Lively discussion of current challenges written in a colloquial style; Author is a rising star in this discipline; Suitably accessible for beginners and suitably rigorous for experts; Features extensive four-color illustrations; Appendices featuring homework assignments and reading lists complement the material in the main text

Molecular Modeling And Simulation An Interdisciplinary Guide

Author: Tamar Schlick
Publisher: Springer Science & Business Media
ISBN: 1441963510
Size: 10.85 MB
Format: PDF, Kindle
View: 25

Very broad overview of the field intended for an interdisciplinary audience; Lively discussion of current challenges written in a colloquial style; Author is a rising star in this discipline; Suitably accessible for beginners and suitably rigorous for experts; Features extensive four-color illustrations; Appendices featuring homework assignments and reading lists complement the material in the main text

Dynamic Systems Biology Modeling And Simulation

Author: Joseph J. DiStefano
Publisher: Academic Press
ISBN: 0124104118
Size: 15.48 MB
Format: PDF, ePub, Docs
View: 69

Dynamic Systems Biology Modeling and Simuation consolidates and unifies classical and contemporary multiscale methodologies for mathematical modeling and computer simulation of dynamic biological systems - from molecular/cellular, organ-system, on up to population levels. The book pedagogy is developed as a well-annotated, systematic tutorial - with clearly spelled-out and unified nomenclature - derived from the author's own modeling efforts, publications and teaching over half a century. Ambiguities in some concepts and tools are clarified and others are rendered more accessible and practical. The latter include novel qualitative theory and methodologies for recognizing dynamical signatures in data using structural (multicompartmental and network) models and graph theory; and analyzing structural and measurement (data) models for quantification feasibility. The level is basic-to-intermediate, with much emphasis on biomodeling from real biodata, for use in real applications. Introductory coverage of core mathematical concepts such as linear and nonlinear differential and difference equations, Laplace transforms, linear algebra, probability, statistics and stochastics topics; PLUS ... The pertinent biology, biochemistry, biophysics or pharmacology for modeling are provided, to support understanding the amalgam of "math modeling" with life sciences. Strong emphasis on quantifying as well as building and analyzing biomodels: includes methodology and computational tools for parameter identifiability and sensitivity analysis; parameter estimation from real data; model distinguishability and simplification; and practical bioexperiment design and optimization. Companion website provides solutions and program code for examples and exercises using Matlab, Simulink, VisSim, SimBiology, SAAMII, AMIGO, Copasi and SBML-coded models.

Applied Simulation Modeling

Author: Andrew F. Seila
Publisher: Brooks/Cole
ISBN: UCSD:31822033122219
Size: 16.74 MB
Format: PDF, ePub, Docs
View: 70

APPLIED SIMULATION MODELING provides the student with both a conceptual introduction to the concepts of simulation modeling and practical experience with real examples using popular commercial simulation packages ARENA and @Risk. The coverage includes Risk Simulation, Dynamic Systems, and Discrete Event Simulation models. Throughout the text, the authors show readers how they can use simulation in the context of decision making. Practical examples from Operations Management, Manufacturing, Health Care, and Finance are included throughout to give students an appreciation for the wide scope of application and the robust nature of simulation modeling. Special student editions of ARENA and @Risk are packaged with the text.

Scientific Computing With Ordinary Differential Equations

Author: Peter Deuflhard
Publisher: Springer Science & Business Media
ISBN: 0387954627
Size: 16.50 MB
Format: PDF, Docs
View: 88

Well-known authors; Includes topics and results that have previously not been covered in a book; Uses many interesting examples from science and engineering; Contains numerous homework exercises; Scientific computing is a hot and topical area

Molecular Dynamics Simulation

Author: J. M. Haile
Publisher: University of Texas Press
ISBN: 047118439X
Size: 14.25 MB
Format: PDF, ePub
View: 75

"Provides a lot of reading pleasure and many new insights." -Journal of Molecular Structure "This is the most entertaining, stimulating and useful book which can be thoroughly recommended to anyone with an interest in computer simulation." -Contemporary Physics "A very useful introduction . . . more interesting to read than the often dry equation-based texts." -Journal of the American Chemical Society Written especially for the novice, Molecular Dynamics Simulation demonstrates how molecular dynamics simulations work and how to perform them, focusing on how to devise a model for specific molecules and then how to simulate their movements using a computer. This book provides a collection of methods that until now have been scattered through the literature of the last 25 years. It reviews elements of sampling theory and discusses how modern notions of chaos and nonlinear dynamics explain the workings of molecular dynamics. Stresses easy-to-use molecules * Provides sample calculations and figures * Includes four complete FORTRAN codes

Linear Chaos

Author: Karl-G. Grosse-Erdmann
Publisher: Springer Science & Business Media
ISBN: 9781447121701
Size: 16.61 MB
Format: PDF
View: 48

It is commonly believed that chaos is linked to non-linearity, however many (even quite natural) linear dynamical systems exhibit chaotic behavior. The study of these systems is a young and remarkably active field of research, which has seen many landmark results over the past two decades. Linear dynamics lies at the crossroads of several areas of mathematics including operator theory, complex analysis, ergodic theory and partial differential equations. At the same time its basic ideas can be easily understood by a wide audience. Written by two renowned specialists, Linear Chaos provides a welcome introduction to this theory. Split into two parts, part I presents a self-contained introduction to the dynamics of linear operators, while part II covers selected, largely independent topics from linear dynamics. More than 350 exercises and many illustrations are included, and each chapter contains a further ‘Sources and Comments’ section. The only prerequisites are a familiarity with metric spaces, the basic theory of Hilbert and Banach spaces and fundamentals of complex analysis. More advanced tools, only needed occasionally, are provided in two appendices. A self-contained exposition, this book will be suitable for self-study and will appeal to advanced undergraduate or beginning graduate students. It will also be of use to researchers in other areas of mathematics such as partial differential equations, dynamical systems and ergodic theory.